Every once in awhile the guide doesn’t update automatically. It’s easy to fix, though. Just click the next item manually and you’ll be back on track. Originally various quests didn’t all update automatically, but updates have corrected this. With the updates you will likely find that the only time that things don’t automatically update is when hearthing or flying in to someplace.
Allied races aren’t much better. You can only earn them by grinding out reputation. It doesn’t take that long but casual players will need to invest a couple weeks primarily to it, and focusing on that grind will take you away from others, like earning gear. Each race has its own grind, but the things you do to work through it remain the same, adding to your boredom.
/way commands like /way Shadowmoon Valley:Draenor 50.0 31.2 Ashlei don't work correctly. According to the way TomTom works, this waypoint should be created in Draenor's Shadowmoon Valley. Instead, it will be created in Outland's Shadowmoon Valley. So it seems there is currently no way to distinguish between zones that occur more than once with the same name, such as Shadowmoon Valley or Nagrand.